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File: quarto-jats-html.xsl
<?xml version="1.0"?> <!-- ============================================================= --> <!-- MODULE: HTML Preview of NISO JATS Publishing 1.0 XML --> <!-- DATE: May-June 2012 --> <!-- --> <!-- ============================================================= --> <!-- ============================================================= --> <!-- SYSTEM: NCBI Archiving and Interchange Journal Articles --> <!-- --> <!-- PURPOSE: Provide an HTML preview of a journal article, --> <!-- in a form suitable for reading. --> <!-- --> <!-- PROCESSOR DEPENDENCIES: --> <!-- None: standard XSLT 1.0 --> <!-- Tested using Saxon 6.5, Tranformiix (Firefox), --> <!-- Saxon 9.4.0.3 --> <!-- --> <!-- COMPONENTS REQUIRED: --> <!-- 1) This stylesheet --> <!-- 2) CSS styles defined in jats-preview.css --> <!-- (to be placed with the results) --> <!-- --> <!-- INPUT: An XML document valid to (any of) the --> <!-- NISO JATS 1.0, NLM/NCBI Journal Publishing 3.0, --> <!-- or NLM/NCBI Journal Publishing 2.3 DTDs. --> <!-- (May also work with older variants, --> <!-- and note further assumptions and limitations --> <!-- below.) --> <!-- --> <!-- OUTPUT: HTML (XHTML if a postprocessor is used) --> <!-- --> <!-- CREATED FOR: --> <!-- Digital Archive of Journal Articles --> <!-- National Center for Biotechnology Information (NCBI) --> <!-- National Library of Medicine (NLM) --> <!-- --> <!-- CREATED BY: --> <!-- Wendell Piez (based on HTML design by --> <!-- Kate Hamilton and Debbie Lapeyre, 2004), --> <!-- Mulberry Technologies, Inc. --> <!-- --> <!-- ============================================================= --> <!-- ============================================================= --> <!-- This work is in the public domain and may be reproduced, published or otherwise used without the permission of the National Library of Medicine (NLM). We request only that the NLM is cited as the source of the work. Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NLM and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NLM and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose. --> <!-- ============================================================= --> <!-- Change history --> <!-- From jpub3-html.xsl v3.0 to jats-html.xsl v1.0: Calls to 'normalize-space($node)' where $node is not a string are expressed as 'normalize-space(string($node)) in order to provide type safety in some XSLT 2.0 processors. Support for certain elements in NLM Blue v2.3 is added to provide backward compatibility: floats-wrap (same as floats-group) chem-struct-wrapper (same as chem-struct-wrap) custom-meta-wrap (same as custom-meta-group) floats-wrap (same as floats-group) gloss-group (same as glossary) citation contract-num contract-sponsor grant-num grant-sponsor Support is added for looser structures for title-group elements in 2.3 (title, trans-title, trans-subtitle etc.) Same for 2.3 tagging of permissions info (copyright-statement, copyright-year, license) and funding/contract info (contract-num, contract-sponsor, grant-num, grant-sponsor). Elements newly permitted in JATS journal-meta (contrib-group, aff, aff-alternatives) are supported. New elements in NISO JATS v1.0 are supported: aff-alternatives citation-alternatives collab-alternatives trans-title-group (with @xml:lang) contrib-id count> issn-l nested-kwd Added support for @pub-id-type='arXiv' Named anchor logic extended to support "alternatives" wrappers for aff, contrib, citation etc. Footer text is emended, with name of transformation (stylesheet or pipeline) parameterized. --> <xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" exclude-result-prefixes="xlink mml"> <!--<xsl:output method="xml" indent="no" encoding="UTF-8" doctype-public="-//W3C//DTD XHTML 1.0 Transitional//EN" doctype-system="http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"/>--> <xsl:output doctype-public="-//W3C//DTD HTML 4.01 Transitional//EN" doctype-system="http://www.w3.org/TR/html4/loose.dtd" encoding="UTF-8"/> <xsl:strip-space elements="*"/> <!-- Space is preserved in all elements allowing #PCDATA --> <xsl:preserve-space elements="abbrev abbrev-journal-title access-date addr-line aff alt-text alt-title article-id article-title attrib award-id bold chapter-title chem-struct collab comment compound-kwd-part compound-subject-part conf-acronym conf-date conf-loc conf-name conf-num conf-sponsor conf-theme contrib-id copyright-holder copyright-statement copyright-year corresp country date-in-citation day def-head degrees disp-formula edition elocation-id email etal ext-link fax fpage funding-source funding-statement given-names glyph-data gov inline-formula inline-supplementary-material institution isbn issn-l issn issue issue-id issue-part issue-sponsor issue-title italic journal-id journal-subtitle journal-title kwd label license-p long-desc lpage meta-name meta-value mixed-citation monospace month named-content object-id on-behalf-of overline p page-range part-title patent person-group phone prefix preformat price principal-award-recipient principal-investigator product pub-id publisher-loc publisher-name related-article related-object role roman sans-serif sc season self-uri series series-text series-title sig sig-block size source speaker std strike string-name styled-content std-organization sub subject subtitle suffix sup supplement surname target td term term-head tex-math textual-form th time-stamp title trans-source trans-subtitle trans-title underline uri verse-line volume volume-id volume-series xref year mml:annotation mml:ci mml:cn mml:csymbol mml:mi mml:mn mml:mo mml:ms mml:mtext"/> <xsl:param name="transform" select="'quarto-jats-html.xsl'"/> <xsl:param name="css" select="'quarto-jats-preview.css'"/> <xsl:param name="report-warnings" select="'no'"/> <xsl:variable name="verbose" select="$report-warnings='yes'"/> <!-- Keys --> <!-- To reduce dependency on a DTD for processing, we declare a key to use instead of the id() function. --> <xsl:key name="element-by-id" match="*[@id]" use="@id"/> <!-- Enabling retrieval of cross-references to objects --> <xsl:key name="xref-by-rid" match="xref" use="@rid"/> <!-- ============================================================= --> <!-- ROOT TEMPLATE - HANDLES HTML FRAMEWORK --> <!-- ============================================================= --> <xsl:template match="/"> <html> <!-- HTML header --> <xsl:call-template name="make-html-header"/> <body> <xsl:apply-templates/> </body> <!-- quarto-after-body --> </html> </xsl:template> <xsl:template name="make-html-header"> <head> <title> <xsl:variable name="authors"> <xsl:call-template name="author-string"/> </xsl:variable> <xsl:value-of select="normalize-space(string($authors))"/> <xsl:if test="normalize-space(string($authors))">: </xsl:if> <xsl:value-of select="/article/front/article-meta/title-group/article-title[1]"/> </title> <link rel="stylesheet" type="text/css" href="{$css}"/> <!-- XXX check: any other header stuff? XXX --> </head> </xsl:template> <!-- ============================================================= --> <!-- TOP LEVEL --> <!-- ============================================================= --> <!-- content model for article: (front,body?,back?,floats-group?,(sub-article*|response*)) content model for sub-article: ((front|front-stub),body?,back?,floats-group?, (sub-article*|response*)) content model for response: ((front|front-stub),body?,back?,floats-group?) --> <xsl:template match="article"> <xsl:call-template name="make-article"/> </xsl:template> <xsl:template match="sub-article | response"> <hr class="part-rule"/> <xsl:call-template name="make-article"/> </xsl:template> <!-- ============================================================= --> <!-- "make-article" for the document architecture --> <!-- ============================================================= --> <xsl:template name="make-article"> <!-- Generates a series of (flattened) divs for contents of any article, sub-article or response --> <!-- variable to be used in div id's to keep them unique --> <xsl:variable name="this-article"> <xsl:apply-templates select="." mode="id"/> </xsl:variable> <div id="{$this-article}-front" class="front"> <xsl:apply-templates select="front | front-stub"/> </div> <!-- body --> <xsl:for-each select="body"> <div id="{$this-article}-body" class="body"> <xsl:apply-templates/> </div> </xsl:for-each> <xsl:if test="back | $loose-footnotes"> <!-- $loose-footnotes is defined below as any footnotes outside front matter or fn-group --> <div id="{$this-article}-back" class="back"> <xsl:call-template name="make-back"/> </div> </xsl:if> <xsl:for-each select="floats-group | floats-wrap"> <!-- floats-wrap is from 2.3 --> <div id="{$this-article}-floats" class="back"> <xsl:call-template name="main-title"> <xsl:with-param name="contents"> <span class="generated">Floating objects</span> </xsl:with-param> </xsl:call-template> <xsl:apply-templates/> </div> </xsl:for-each> <!-- more metadata goes in the footer --> <div id="{$this-article}-footer" class="footer"> <xsl:call-template name="footer-metadata"/> <xsl:call-template name="footer-branding"/> </div> <!-- sub-article or response (recursively calls this template) --> <xsl:apply-templates select="sub-article | response"/> </xsl:template> <xsl:template match="front | front-stub"> <!-- change context to front/article-meta (again) --> <xsl:for-each select="article-meta | self::front-stub"> <div class="metadata centered"> <xsl:apply-templates mode="metadata" select="title-group"/> </div> <div class="metadata two-column table authors"> <div class="row"> <div class="cell"> <!-- contrib-group, aff, aff-alternatives, author-notes --> <xsl:apply-templates mode="metadata" select="contrib-group"/> <xsl:if test="aff | aff-alternatives"> <div class="metadata table cell metadata-group"> <xsl:apply-templates mode="metadata" select="author-notes"/> </div> </xsl:if> </div> <div class="cell"> <!-- back in article-meta or front-stub context --> <xsl:if test="aff | aff-alternatives"> <div class="metadata two-column table"> <div class="row"> <div class="cell"> <div class="metadata-group"> <xsl:apply-templates mode="metadata" select="aff | aff-alternatives"/> </div> </div> </div> </div> </xsl:if> </div> </div> </div> <!-- abstract(s) --> <xsl:if test="abstract | trans-abstract"> <!-- rule separates title+authors from abstract(s) --> <hr class="section-rule"/> <xsl:for-each select="abstract | trans-abstract"> <!-- title in left column, content (paras, secs) in right --> <div class="section-abstract"> <h4 class="abstract-title"> <xsl:apply-templates select="title/node()"/> <xsl:if test="not(normalize-space(string(title)))"> <span class="generated"> <xsl:if test="self::trans-abstract">Translated </xsl:if> <xsl:text>Abstract</xsl:text> </span> </xsl:if> </h4> <xsl:apply-templates select="*[not(self::title)]"/> </div> </xsl:for-each> <!-- end of abstract or trans-abstract --> </xsl:if> <!-- end of dealing with abstracts --> </xsl:for-each> <xsl:for-each select="notes"> <div class="metadata"> <xsl:apply-templates mode="metadata" select="."/> </div> </xsl:for-each> <hr class="part-rule"/> <!-- end of big front-matter pull --> </xsl:template> <xsl:template name="footer-metadata"> <hr class="part-rule"/> <xsl:for-each select="front | front-stub"> <!-- First Table: journal and article metadata --> <div class="metadata two-column table"> <div class="row"> <!-- Cell 1: journal information --> <xsl:for-each select="journal-meta"> <!-- (journal-id+, journal-title-group*, (contrib-group | aff | aff-alternatives)*, issn+, issn-l?, isbn*, publisher?, notes*, self-uri*) --> <div class="cell"> <h4 class="generated"> <xsl:text>Journal Information</xsl:text> </h4> <div class="metadata-group"> <xsl:apply-templates select="journal-id | journal-title-group" mode="metadata"/> <!-- the following may appear in 2.3 --> <xsl:apply-templates mode="metadata" select="journal-title | journal-subtitle | trans-title | trans-subtitle | abbrev-journal-title"/> <!-- contrib-group, aff, aff-alternatives, author-notes --> <xsl:apply-templates mode="metadata" select="contrib-group"/> <xsl:if test="aff | aff-alternatives | author-notes"> <div class="metadata-group"> <xsl:apply-templates mode="metadata" select="aff | aff-alternatives | author-notes"/> </div> </xsl:if> <xsl:apply-templates select="issn | issn-l | isbn | publisher | notes | self-uri" mode="metadata"/> </div> </div> </xsl:for-each> <!-- Cell 2: Article information --> <xsl:for-each select="article-meta | self::front-stub"> <!-- content model: (article-id*, article-categories?, title-group, (contrib-group | aff)*, author-notes?, pub-date+, volume?, volume-id*, volume-series?, issue?, issue-id*, issue-title*, issue-sponsor*, issue-part?, isbn*, supplement?, ((fpage, lpage?, page-range?) | elocation-id)?, (email | ext-link | uri | product | supplementary-material)*, history?, permissions?, self-uri*, related-article*, abstract*, trans-abstract*, kwd-group*, funding-group*, conference*, counts?, custom-meta-group?) These are handled as follows: In the "Article Information" header cell: article-id pub-date volume volume-id volume-series issue issue-id issue-title issue-sponsor issue-part isbn supplement fpage lpage page-range elocation-id email ext-link uri product history permissions self-uri related-article funding-group conference In the "Article title" cell: title-group contrib-group aff author-notes abstract trans-abstract In the metadata footer article-categories supplementary-material kwd-group counts custom-meta-group --> <div class="cell"> <h4 class="generated"> <xsl:text>Article Information</xsl:text> </h4> <div class="metadata-group"> <xsl:apply-templates mode="metadata" select="email | ext-link | uri | self-uri"/> <xsl:apply-templates mode="metadata" select="product"/> <!-- only in 2.3 --> <xsl:apply-templates mode="metadata" select="copyright-statement | copyright-year | license"/> <xsl:apply-templates mode="metadata" select="permissions"/> <xsl:apply-templates mode="metadata" select="history/date"/> <xsl:apply-templates mode="metadata" select="pub-date"/> <xsl:call-template name="volume-info"> <!-- handles volume?, volume-id*, volume-series? --> </xsl:call-template> <xsl:call-template name="issue-info"> <!-- handles issue?, issue-id*, issue-title*, issue-sponsor*, issue-part? --> </xsl:call-template> <xsl:call-template name="page-info"> <!-- handles (fpage, lpage?, page-range?) --> </xsl:call-template> <xsl:apply-templates mode="metadata" select="elocation-id"/> <xsl:apply-templates mode="metadata" select="isbn"/> <xsl:apply-templates mode="metadata" select="supplement | related-article | conference"/> <xsl:apply-templates mode="metadata" select="article-id"/> <!-- only in 2.3 --> <xsl:apply-templates mode="metadata" select="contract-num | contract-sponsor | grant-num | grant-sponsor"/> <xsl:apply-templates mode="metadata" select="funding-group/*"> <!-- includes (award-group*, funding-statement*, open-access?) --> </xsl:apply-templates> <xsl:apply-templates mode="metadata" select="supplementary-material"/> <xsl:apply-templates mode="metadata" select="article-categories | kwd-group | counts"/> <xsl:apply-templates mode="metadata" select="custom-meta-group | custom-meta-wrap"/> </div> </div> </xsl:for-each> </div> </div> </xsl:for-each> <xsl:variable name="process-warnings"> <xsl:call-template name="process-warnings"/> </xsl:variable> <xsl:if test="normalize-space(string($process-warnings))"> <hr class="part-rule"/> <div class="metadata one-column table"> <!--<div class="row"> <div class="cell spanning"> </div> </div>--> <div class="row"> <div class="cell spanning"> <h4 class="generated"> <xsl:text>Process warnings</xsl:text> </h4> <p>Warnings reported by the processor due to problematic markup follow:</p> <div class="metadata-group"> <xsl:copy-of select="$process-warnings"/> </div> </div> </div> </div> </xsl:if> </xsl:template> <!-- ============================================================= --> <!-- METADATA PROCESSING --> <!-- ============================================================= --> <!-- Includes mode "metadata" for front matter, along with "metadata-inline" for metadata elements collapsed into inline sequences, plus associated named templates --> <!-- WAS journal-meta content: journal-id+, journal-title-group*, issn+, isbn*, publisher?, notes? --> <!-- (journal-id+, journal-title-group*, (contrib-group | aff | aff-alternatives)*, issn+, issn-l?, isbn*, publisher?, notes*, self-uri*) --> <xsl:template match="journal-id" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Journal ID</xsl:text> <xsl:for-each select="@journal-id-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="journal-title-group" mode="metadata"> <xsl:apply-templates mode="metadata"/> </xsl:template> <xsl:template match="issn" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>ISSN</xsl:text> <xsl:call-template name="append-pub-type"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="issn-l" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>ISSN-L</xsl:text> <xsl:call-template name="append-pub-type"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="isbn" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>ISBN</xsl:text> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="publisher" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Publisher</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="publisher-name" mode="metadata-inline"/> <xsl:apply-templates select="publisher-loc" mode="metadata-inline"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="publisher-name" mode="metadata-inline"> <xsl:apply-templates/> </xsl:template> <xsl:template match="publisher-loc" mode="metadata-inline"> <span class="generated"> (</span> <xsl:apply-templates/> <span class="generated">)</span> </xsl:template> <xsl:template match="notes" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Notes</xsl:with-param> </xsl:call-template> </xsl:template> <!-- journal-title-group content: (journal-title*, journal-subtitle*, trans-title-group*, abbrev-journal-title*) --> <xsl:template match="journal-title" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Title</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="journal-subtitle" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Subtitle</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="trans-title-group" mode="metadata"> <xsl:apply-templates mode="metadata"/> </xsl:template> <xsl:template match="abbrev-journal-title" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Abbreviated Title</xsl:with-param> </xsl:call-template> </xsl:template> <!-- trans-title-group content: (trans-title, trans-subtitle*) --> <xsl:template match="trans-title" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Translated Title</xsl:text> <xsl:for-each select="(../@xml:lang|@xml:lang)[last()]"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="trans-subtitle" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Translated Subtitle</xsl:text> <xsl:for-each select="(../@xml:lang|@xml:lang)[last()]"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:template> <!-- article-meta content: (article-id*, article-categories?, title-group, (contrib-group | aff)*, author-notes?, pub-date+, volume?, volume-id*, volume-series?, issue?, issue-id*, issue-title*, issue-sponsor*, issue-part?, isbn*, supplement?, ((fpage, lpage?, page-range?) | elocation-id)?, (email | ext-link | uri | product | supplementary-material)*, history?, permissions?, self-uri*, related-article*, abstract*, trans-abstract*, kwd-group*, funding-group*, conference*, counts?, custom-meta-group?) --> <!-- In order of appearance... --> <xsl:template match="ext-link" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>External link</xsl:text> <xsl:for-each select="ext-link-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="."/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="email" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Email</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="."/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="uri" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">URI</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="."/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="self-uri" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Self URI</xsl:text> </xsl:with-param> <xsl:with-param name="contents"> <a href="{@xlink:href}"> <xsl:choose> <xsl:when test="normalize-space(string(.))"> <xsl:apply-templates/> </xsl:when> <xsl:otherwise> <xsl:value-of select="@xlink:href"/> </xsl:otherwise> </xsl:choose> </a> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="product" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Product Information</xsl:text> </xsl:with-param> <xsl:with-param name="contents"> <xsl:choose> <xsl:when test="normalize-space(string(@xlink:href))"> <a> <xsl:call-template name="assign-href"/> <xsl:apply-templates/> </a> </xsl:when> <xsl:otherwise> <xsl:apply-templates/> </xsl:otherwise> </xsl:choose> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="permissions" mode="metadata"> <xsl:apply-templates select="copyright-statement" mode="metadata"/> <xsl:if test="copyright-year | copyright-holder"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Copyright</xsl:with-param> <xsl:with-param name="contents"> <xsl:for-each select="copyright-year | copyright-holder"> <xsl:apply-templates/> <xsl:if test="not(position()=last())">, </xsl:if> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:if> <xsl:apply-templates select="license" mode="metadata"/> </xsl:template> <xsl:template match="copyright-statement" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Copyright statement</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="copyright-year" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Copyright</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="license" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label"> <xsl:text>License</xsl:text> <xsl:if test="@license-type | @xlink:href"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="@license-type"/> <xsl:if test="@xlink:href"> <xsl:if test="@license-type">, </xsl:if> <a> <xsl:call-template name="assign-href"/> <xsl:value-of select="@xlink:href"/> </a> </xsl:if> </span> <xsl:text>)</xsl:text> </xsl:if> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="history/date" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Date</xsl:text> <xsl:for-each select="@date-type"> <xsl:choose> <xsl:when test=".='accepted'"> accepted</xsl:when> <xsl:when test=".='received'"> received</xsl:when> <xsl:when test=".='rev-request'"> revision requested</xsl:when> <xsl:when test=".='rev-recd'"> revision received</xsl:when> </xsl:choose> </xsl:for-each> </xsl:with-param> <xsl:with-param name="contents"> <xsl:call-template name="format-date"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="pub-date" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Publication date</xsl:text> <xsl:call-template name="append-pub-type"/> </xsl:with-param> <xsl:with-param name="contents"> <xsl:call-template name="format-date"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template name="volume-info"> <!-- handles volume?, volume-id*, volume-series? --> <xsl:if test="volume | volume-id | volume-series"> <xsl:choose> <xsl:when test="not(volume-id[2]) or not(volume)"> <!-- if there are no multiple volume-id, or no volume, we make one line only --> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Volume</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="volume | volume-series" mode="metadata-inline"/> <xsl:apply-templates select="volume-id" mode="metadata-inline"/> </xsl:with-param> </xsl:call-template> </xsl:when> <xsl:otherwise> <xsl:apply-templates select="volume | volume-id | volume-series" mode="metadata"/> </xsl:otherwise> </xsl:choose> </xsl:if> </xsl:template> <xsl:template match="volume | issue" mode="metadata-inline"> <xsl:apply-templates/> </xsl:template> <xsl:template match="volume-id | issue-id" mode="metadata-inline"> <span class="generated"> <xsl:text> (</xsl:text> <xsl:for-each select="@pub-id-type"> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text> </xsl:text> </xsl:for-each> <xsl:text>ID: </xsl:text> </span> <xsl:apply-templates/> <span class="generated">)</span> </xsl:template> <xsl:template match="volume-series" mode="metadata-inline"> <xsl:if test="preceding-sibling::volume"> <span class="generated">,</span> </xsl:if> <xsl:text> </xsl:text> <xsl:apply-templates/> </xsl:template> <xsl:template match="volume" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Volume</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="volume-id" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Volume ID</xsl:text> <xsl:for-each select="@pub-id-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="volume-series" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Series</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template name="issue-info"> <!-- handles issue?, issue-id*, issue-title*, issue-sponsor*, issue-part?, supplement? --> <xsl:variable name="issue-info" select="issue | issue-id | issue-title | issue-sponsor | issue-part"/> <xsl:choose> <xsl:when test="$issue-info and not(issue-id[2] | issue-title[2] | issue-sponsor | issue-part)"> <!-- if there are only one issue, issue-id and issue-title and nothing else, we make one line only --> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Issue</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="issue | issue-title" mode="metadata-inline"/> <xsl:apply-templates select="issue-id" mode="metadata-inline"/> </xsl:with-param> </xsl:call-template> </xsl:when> <xsl:otherwise> <xsl:apply-templates select="$issue-info" mode="metadata"/> </xsl:otherwise> </xsl:choose> </xsl:template> <xsl:template match="issue-title" mode="metadata-inline"> <span class="generated"> <xsl:if test="preceding-sibling::issue">,</xsl:if> </span> <xsl:text> </xsl:text> <xsl:apply-templates/> </xsl:template> <xsl:template match="issue" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Issue</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="issue-id" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Issue ID</xsl:text> <xsl:for-each select="@pub-id-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="issue-title" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Issue title</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="issue-sponsor" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Issue sponsor</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="issue-part" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Issue part</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template name="page-info"> <!-- handles (fpage, lpage?, page-range?) --> <xsl:if test="fpage | lpage | page-range"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Page</xsl:text> <xsl:if test="normalize-space(string(lpage[not(.=../fpage)])) or normalize-space(string(page-range))"> <!-- we have multiple pages if lpage exists and is not equal fpage, or if we have a page-range --> <xsl:text>s</xsl:text> </xsl:if> </xsl:with-param> <xsl:with-param name="contents"> <xsl:value-of select="fpage"/> <xsl:if test="normalize-space(string(lpage[not(.=../fpage)]))"> <xsl:text>-</xsl:text> <xsl:value-of select="lpage"/> </xsl:if> <xsl:for-each select="page-range"> <xsl:text> (pp. </xsl:text> <xsl:value-of select="."/> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:if> </xsl:template> <xsl:template match="elocation-id" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Electronic Location Identifier</xsl:with-param> </xsl:call-template> </xsl:template> <!-- isbn is already matched in mode 'metadata' above --> <xsl:template match="supplement" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Supplement Info</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="related-article | related-object" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Related </xsl:text> <xsl:choose> <xsl:when test="self::related-object">object</xsl:when> <xsl:otherwise>article</xsl:otherwise> </xsl:choose> <xsl:for-each select="@related-article-type | @object-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="translate(.,'-',' ')"/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> <xsl:with-param name="contents"> <xsl:choose> <xsl:when test="normalize-space(string(@xlink:href))"> <a> <xsl:call-template name="assign-href"/> <xsl:apply-templates/> </a> </xsl:when> <xsl:otherwise> <xsl:apply-templates/> </xsl:otherwise> </xsl:choose> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="conference" mode="metadata"> <!-- content model: (conf-date, (conf-name | conf-acronym)+, conf-num?, conf-loc?, conf-sponsor*, conf-theme?) --> <xsl:choose> <xsl:when test="not(conf-name[2] | conf-acronym[2] | conf-sponsor | conf-theme)"> <!-- if there is no second name or acronym, and no sponsor or theme, we make one line only --> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Conference</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="conf-acronym | conf-name" mode="metadata-inline"/> <xsl:apply-templates select="conf-num" mode="metadata-inline"/> <xsl:if test="conf-date | conf-loc"> <span class="generated"> (</span> <xsl:for-each select="conf-date | conf-loc"> <xsl:if test="position() = 2">, </xsl:if> <xsl:apply-templates select="." mode="metadata-inline"/> </xsl:for-each> <span class="generated">)</span> </xsl:if> </xsl:with-param> </xsl:call-template> </xsl:when> <xsl:otherwise> <xsl:apply-templates mode="metadata"/> </xsl:otherwise> </xsl:choose> </xsl:template> <xsl:template match="conf-date" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Conference date</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="conf-name" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Conference</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="conf-acronym" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Conference</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="conf-num" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Conference number</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="conf-loc" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Conference location</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="conf-sponsor" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Conference sponsor</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="conf-theme" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Conference theme</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="conf-name | conf-acronym" mode="metadata-inline"> <!-- we only hit this template if there is at most one of each --> <xsl:variable name="following" select="preceding-sibling::conf-name | preceding-sibling::conf-acronym"/> <!-- if we come after the other, we go in parentheses --> <xsl:if test="$following"> <span class="generated"> (</span> </xsl:if> <xsl:apply-templates/> <xsl:if test="$following"> <span class="generated">)</span> </xsl:if> </xsl:template> <xsl:template match="conf-num" mode="metadata-inline"> <xsl:text> </xsl:text> <xsl:apply-templates/> </xsl:template> <xsl:template match="conf-date | conf-loc" mode="metadata-inline"> <xsl:apply-templates/> </xsl:template> <xsl:template match="article-id" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:choose> <xsl:when test="@pub-id-type='art-access-id'">Accession ID</xsl:when> <xsl:when test="@pub-id-type='coden'">Coden</xsl:when> <xsl:when test="@pub-id-type='doi'">DOI</xsl:when> <xsl:when test="@pub-id-type='manuscript'">Manuscript ID</xsl:when> <xsl:when test="@pub-id-type='medline'">Medline ID</xsl:when> <xsl:when test="@pub-id-type='pii'">Publisher Item ID</xsl:when> <xsl:when test="@pub-id-type='pmid'">PubMed ID</xsl:when> <xsl:when test="@pub-id-type='publisher-id'">Publisher ID</xsl:when> <xsl:when test="@pub-id-type='sici'">Serial Item and Contribution ID</xsl:when> <xsl:when test="@pub-id-type='doaj'">DOAJ ID</xsl:when> <xsl:when test="@pub-id-type='arXiv'">arXiv.org ID</xsl:when> <xsl:otherwise> <xsl:text>Article Id</xsl:text> <xsl:for-each select="@pub-id-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:otherwise> </xsl:choose> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="contract-num" mode="metadata"> <!-- only in 2.3 --> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Contract</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="contract-sponsor" mode="metadata"> <!-- only in 2.3 --> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Contract Sponsor</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="grant-num" mode="metadata"> <!-- only in 2.3 --> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Grant Number</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="grant-sponsor" mode="metadata"> <!-- only in 2.3 --> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Grant Sponsor</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="award-group" mode="metadata"> <!-- includes (funding-source*, award-id*, principal-award-recipient*, principal-investigator*) --> <xsl:apply-templates mode="metadata"/> </xsl:template> <xsl:template match="funding-source" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Funded by</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="award-id" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Award ID</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="principal-award-recipient" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Award Recipient</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="principal-investigator" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Principal Investigator</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="funding-statement" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Funding</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="open-access" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Open Access</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="title-group" mode="metadata"> <!-- content model: article-title, subtitle*, trans-title-group*, alt-title*, fn-group? --> <!-- trans-title and trans-subtitle included for 2.3 --> <xsl:apply-templates select="article-title | subtitle | trans-title-group | trans-title | trans-subtitle" mode="metadata"/> <xsl:if test="alt-title | fn-group"> <div class="document-title-notes metadata-group"> <xsl:apply-templates select="alt-title | fn-group" mode="metadata"/> </div> </xsl:if> </xsl:template> <xsl:template match="title-group/article-title" mode="metadata"> <h1 class="document-title"> <xsl:apply-templates/> <xsl:if test="../subtitle">:</xsl:if> </h1> </xsl:template> <xsl:template match="title-group/subtitle | trans-title-group/subtitle" mode="metadata"> <h2 class="document-title"> <xsl:apply-templates/> </h2> </xsl:template> <xsl:template match="title-group/trans-title-group" mode="metadata"> <!-- content model: (trans-title, trans-subtitle*) --> <xsl:apply-templates mode="metadata"/> </xsl:template> <xsl:template match="title-group/alt-title" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Alternative title</xsl:text> <xsl:for-each select="@alt-title-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="title-group/fn-group" mode="metadata"> <xsl:apply-templates/> </xsl:template> <xsl:template mode="metadata" match="journal-meta/contrib-group"> <xsl:for-each select="contrib"> <xsl:variable name="contrib-identification"> <xsl:call-template name="contrib-identify"/> </xsl:variable> <!-- placing the div only if it has content --> <!-- the extra call to string() makes it type-safe in a type-aware XSLT 2.0 engine --> <xsl:if test="normalize-space(string($contrib-identification))"> <xsl:copy-of select="$contrib-identification"/> </xsl:if> <xsl:variable name="contrib-info"> <xsl:call-template name="contrib-info"/> </xsl:variable> <!-- placing the div only if it has content --> <xsl:if test="normalize-space(string($contrib-info))"> <xsl:copy-of select="$contrib-info"/> </xsl:if> </xsl:for-each> <xsl:if test="*[not(self::contrib | self::xref)]"> <xsl:apply-templates mode="metadata" select="*[not(self::contrib | self::xref)]"/> </xsl:if> </xsl:template> <xsl:template mode="metadata" match="article-meta/contrib-group"> <!-- content model of contrib-group: (contrib+, (address | aff | author-comment | bio | email | ext-link | on-behalf-of | role | uri | xref)*) --> <!-- each contrib makes a row: name at left, details at right --> <div class="metadata"> <xsl:for-each select="contrib"> <!-- content model of contrib: ((contrib-id)*, (anonymous | collab | collab-alternatives | name | name-alternatives)*, (degrees)*, (address | aff | aff-alternatives | author-comment | bio | email | ext-link | on-behalf-of | role | uri | xref)*) --> <div class="row"> <div class="cell" style="text-align: left"> <xsl:call-template name="contrib-identify"> <!-- handles (contrib-id)*, (anonymous | collab | collab-alternatives | name | name-alternatives | degrees | xref) --> </xsl:call-template> <xsl:call-template name="contrib-info"> <!-- handles (address | aff | author-comment | bio | email | ext-link | on-behalf-of | role | uri) --> </xsl:call-template> </div> </div> </xsl:for-each> </div> <!-- end of contrib --> <xsl:variable name="misc-contrib-data" select="*[not(self::contrib | self::xref)]"/> <xsl:if test="$misc-contrib-data"> <div class="metadata two-column table"> <div class="row"> <div class="cell"> </div> <div class="cell"> <div class="metadata-group"> <xsl:apply-templates mode="metadata" select="$misc-contrib-data"/> </div> </div> </div> </div> </xsl:if> </xsl:template> <xsl:template name="contrib-identify"> <!-- Placed in a left-hand pane --> <!--handles (anonymous | collab | collab-alternatives | name | name-alternatives | degrees | xref) and @equal-contrib --> <div class="metadata-group"> <xsl:for-each select="anonymous | collab | collab-alternatives/* | name | name-alternatives/*"> <xsl:call-template name="metadata-entry"> <xsl:with-param name="contents"> <xsl:if test="position() = 1"> <!-- a named anchor for the contrib goes with its first member --> <xsl:call-template name="named-anchor"/> <!-- so do any contrib-ids --> </xsl:if> <xsl:apply-templates select="." mode="metadata-inline"/> <xsl:if test="position() = last()"> <xsl:apply-templates mode="metadata-inline" select="degrees | xref"/> <!-- xrefs in the parent contrib-group go with the last member of *each* contrib in the group --> <xsl:apply-templates mode="metadata-inline" select="following-sibling::xref"/> </xsl:if> <br/> <xsl:apply-templates mode="metadata-inline" select="../contrib-id"/> </xsl:with-param> </xsl:call-template> </xsl:for-each> </div> </xsl:template> <xsl:template match="anonymous" mode="metadata-inline"> <xsl:text>Anonymous</xsl:text> </xsl:template> <xsl:template match="collab | collab-alternatives/*" mode="metadata-inline"> <xsl:apply-templates/> </xsl:template> <xsl:template match="contrib/name | contrib/name-alternatives/*" mode="metadata-inline"> <xsl:apply-templates select="."/> </xsl:template> <xsl:template match="degrees" mode="metadata-inline"> <xsl:text>, </xsl:text> <xsl:apply-templates/> </xsl:template> <xsl:template match="xref" mode="metadata-inline"> <!-- These are not expected to appear in mixed content, so brackets are provided --> <span class="generated">[</span> <xsl:apply-templates select="."/> <span class="generated">]</span> </xsl:template> <xsl:template match="contrib-id" mode="metadata-inline"> <span class="generated">[</span> <xsl:apply-templates select="."/> <span class="generated">] </span> </xsl:template> <xsl:template name="contrib-info"> <!-- Placed in a right-hand pane --> <div class="metadata-group"> <xsl:apply-templates mode="metadata" select="address | aff | author-comment | bio | email | ext-link | on-behalf-of | role | uri"/> </div> </xsl:template> <xsl:template mode="metadata" match="address[not(addr-line) or not(*[2])]"> <!-- when we have no addr-line or a single child, we generate a single unlabelled line --> <xsl:call-template name="metadata-entry"> <xsl:with-param name="contents"> <xsl:call-template name="address-line"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="address" mode="metadata"> <!-- when we have an addr-line we generate an unlabelled block --> <xsl:call-template name="metadata-area"> <xsl:with-param name="contents"> <xsl:apply-templates mode="metadata"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template mode="metadata" priority="2" match="address/*"> <!-- being sure to override other templates for these element types --> <xsl:call-template name="metadata-entry"/> </xsl:template> <xsl:template match="aff" mode="metadata"> <xsl:call-template name="metadata-entry"> <xsl:with-param name="contents"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="author-comment" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Comment</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="bio" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Bio</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="on-behalf-of" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">On behalf of</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="role" mode="metadata"> <xsl:call-template name="metadata-entry"/> </xsl:template> <xsl:template match="author-notes" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Author notes</xsl:with-param> <xsl:with-param name="contents"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates mode="metadata"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="author-notes/corresp" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:call-template name="named-anchor"/> <xsl:text>Correspondence to</xsl:text> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="author-notes/fn | author-notes/p" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:apply-templates select="@fn-type"/> </xsl:with-param> <xsl:with-param name="contents"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="supplementary-material" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Supplementary material</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="article-categories" mode="metadata"> <xsl:apply-templates mode="metadata"/> </xsl:template> <xsl:template match="article-categories/subj-group" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Categories</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates mode="metadata"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="subj-group" mode="metadata"> <xsl:apply-templates mode="metadata"/> </xsl:template> <xsl:template match="subj-group/subj-group" mode="metadata"> <div class="metadata-area"> <xsl:apply-templates mode="metadata"/> </div> </xsl:template> <xsl:template match="subj-group/subject" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Subject</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="series-title" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Series title</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="series-text" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Series description</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="kwd-group" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label"> <xsl:apply-templates select="title|label" mode="metadata-inline"/> <xsl:if test="not(title|label)">Keywords</xsl:if> </xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates mode="metadata"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="title" mode="metadata"> <xsl:apply-templates select="."/> </xsl:template> <xsl:template match="kwd" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label">Keyword</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="nested-kwd" mode="metadata"> <ul class="nested-kwd"> <xsl:apply-templates mode="metadata"/> </ul> </xsl:template> <xsl:template match="nested-kwd/kwd" mode="metadata"> <li class="kwd"> <xsl:apply-templates/> </li> </xsl:template> <xsl:template match="compound-kwd" mode="metadata"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Compound keyword</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates mode="metadata"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="compound-kwd-part" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:text>Keyword part</xsl:text> <xsl:for-each select="@content-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="counts" mode="metadata"> <!-- fig-count?, table-count?, equation-count?, ref-count?, page-count?, word-count? --> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Counts</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates mode="metadata"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template mode="metadata" match="count | fig-count | table-count | equation-count | ref-count | page-count | word-count"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:apply-templates select="." mode="metadata-label"/> </xsl:with-param> <xsl:with-param name="contents"> <xsl:value-of select="@count"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="count" mode="metadata-label"> <xsl:text>Count</xsl:text> <xsl:for-each select="@count-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:value-of select="."/> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:template> <xsl:template match="fig-count" mode="metadata-label">Figures</xsl:template> <xsl:template match="table-count" mode="metadata-label">Tables</xsl:template> <xsl:template match="equation-count" mode="metadata-label">Equations</xsl:template> <xsl:template match="ref-count" mode="metadata-label">References</xsl:template> <xsl:template match="page-count" mode="metadata-label">Pages</xsl:template> <xsl:template match="word-count" mode="metadata-label">Words</xsl:template> <xsl:template mode="metadata" match="custom-meta-group | custom-meta-wrap"> <xsl:call-template name="metadata-area"> <xsl:with-param name="label">Custom metadata</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates mode="metadata"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="custom-meta" mode="metadata"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <span class="data"> <xsl:apply-templates select="meta-name" mode="metadata-inline"/> </span> </xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="meta-value" mode="metadata-inline"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="meta-name | meta-value" mode="metadata-inline"> <xsl:apply-templates/> </xsl:template> <!-- ============================================================= --> <!-- REGULAR (DEFAULT) MODE --> <!-- ============================================================= --> <xsl:template match="sec"> <div class="section"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="title"/> <xsl:apply-templates select="sec-meta"/> <xsl:apply-templates mode="drop-title"/> </div> </xsl:template> <xsl:template match="*" mode="drop-title"> <xsl:apply-templates select="."/> </xsl:template> <xsl:template match="title | sec-meta" mode="drop-title"/> <xsl:template match="app"> <div class="section app"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="." mode="label"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="ref-list" name="ref-list"> <div class="section ref-list"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="." mode="label"/> <xsl:apply-templates select="*[not(self::ref | self::ref-list)]"/> <xsl:if test="ref"> <div class="ref-list table"> <xsl:apply-templates select="ref"/> </div> </xsl:if> <xsl:apply-templates select="ref-list"/> </div> </xsl:template> <xsl:template match="sec-meta"> <div class="section-metadata"> <!-- includes contrib-group | permissions | kwd-group --> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="sec-meta/contrib-group"> <xsl:apply-templates mode="metadata"/> </xsl:template> <xsl:template match="sec-meta/kwd-group"> <!-- matches only if contrib-group has only contrib children --> <xsl:apply-templates select="." mode="metadata"/> </xsl:template> <!-- ============================================================= --> <!-- Titles --> <!-- ============================================================= --> <xsl:template name="main-title" match="abstract/title | body/*/title | back/title | back[not(title)]/*/title"> <xsl:param name="contents"> <xsl:apply-templates/> </xsl:param> <xsl:if test="normalize-space(string($contents))"> <!-- coding defensively since empty titles make glitchy HTML --> <h2 class="main-title"> <xsl:copy-of select="$contents"/> </h2> </xsl:if> </xsl:template> <xsl:template name="section-title" match="abstract/*/title | body/*/*/title | back[title]/*/title | back[not(title)]/*/*/title"> <xsl:param name="contents"> <xsl:apply-templates/> </xsl:param> <xsl:if test="normalize-space(string($contents))"> <!-- coding defensively since empty titles make glitchy HTML --> <h3 class="section-title"> <xsl:copy-of select="$contents"/> </h3> </xsl:if> </xsl:template> <xsl:template name="subsection-title" match="abstract/*/*/title | body/*/*/*/title | back[title]/*/*/title | back[not(title)]/*/*/*/title"> <xsl:param name="contents"> <xsl:apply-templates/> </xsl:param> <xsl:if test="normalize-space(string($contents))"> <!-- coding defensively since empty titles make glitchy HTML --> <h4 class="subsection-title"> <xsl:copy-of select="$contents"/> </h4> </xsl:if> </xsl:template> <xsl:template name="block-title" priority="2" match="list/title | def-list/title | boxed-text/title | verse-group/title | glossary/title | gloss-group/title | kwd-group/title"> <xsl:param name="contents"> <xsl:apply-templates/> </xsl:param> <xsl:if test="normalize-space(string($contents))"> <!-- coding defensively since empty titles make glitchy HTML --> <h4 class="block-title"> <xsl:copy-of select="$contents"/> </h4> </xsl:if> </xsl:template> <!-- default: any other titles found --> <xsl:template match="title"> <xsl:if test="normalize-space(string(.))"> <h3 class="title"> <xsl:apply-templates/> </h3> </xsl:if> </xsl:template> <xsl:template match="subtitle"> <xsl:if test="normalize-space(string(.))"> <h5 class="subtitle"> <xsl:apply-templates/> </h5> </xsl:if> </xsl:template> <!-- ============================================================= --> <!-- Figures, lists and block-level objectS --> <!-- ============================================================= --> <xsl:template match="address"> <xsl:choose> <!-- address appears as a sequence of inline elements if it has no addr-line and the parent may contain text --> <xsl:when test="not(addr-line) and (parent::collab | parent::p | parent::license-p | parent::named-content | parent::styled-content)"> <xsl:call-template name="address-line"/> </xsl:when> <xsl:otherwise> <div class="address"> <xsl:apply-templates/> </div> </xsl:otherwise> </xsl:choose> </xsl:template> <xsl:template name="address-line"> <!-- emits element children in a simple comma-delimited sequence --> <xsl:for-each select="*"> <xsl:if test="position() > 1">, </xsl:if> <xsl:apply-templates/> </xsl:for-each> </xsl:template> <xsl:template match="address/*"> <p class="address-line"> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="array | disp-formula-group | fig-group | fn-group | license | long-desc | open-access | sig-block | table-wrap-foot | table-wrap-group"> <div class="{local-name()}"> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="attrib"> <p class="attrib"> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="boxed-text | chem-struct-wrap | fig | table-wrap | chem-struct-wrapper"> <!-- chem-struct-wrapper is from NLM 2.3 --> <xsl:variable name="gi"> <xsl:choose> <xsl:when test="self::chem-struct-wrapper">chem-struct-wrap</xsl:when> <xsl:otherwise> <xsl:value-of select="local-name(.)"/> </xsl:otherwise> </xsl:choose> </xsl:variable> <div class="{$gi} panel"> <xsl:if test="not(@position != 'float')"> <!-- the test respects @position='float' as the default --> <xsl:attribute name="style">display: float; clear: both</xsl:attribute> </xsl:if> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="." mode="label"/> <xsl:apply-templates/> <xsl:apply-templates mode="footnote" select="self::table-wrap//fn[not(ancestor::table-wrap-foot)]"/> </div> </xsl:template> <xsl:template match="caption"> <div class="caption"> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="disp-formula | statement"> <div class="{local-name()} panel"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="." mode="label"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="glossary | gloss-group"> <!-- gloss-group is from 2.3 --> <div class="glossary"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="label | title"/> <xsl:if test="not(normalize-space(string(title)))"> <xsl:call-template name="block-title"> <xsl:with-param name="contents"> <span class="generated">Glossary</span> </xsl:with-param> </xsl:call-template> </xsl:if> <xsl:apply-templates select="*[not(self::label|self::title)]"/> </div> </xsl:template> <xsl:template match="textual-form"> <p class="textual-form"> <span class="generated">[Textual form] </span> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="glossary/glossary | gloss-group/gloss-group"> <!-- the same document shouldn't have both types --> <div class="glossary"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="graphic | inline-graphic"> <xsl:apply-templates/> <img alt="{@xlink:href}"> <xsl:for-each select="alt-text"> <xsl:attribute name="alt"> <xsl:value-of select="normalize-space(string(.))"/> </xsl:attribute> </xsl:for-each> <xsl:call-template name="assign-src"/> </img> </xsl:template> <xsl:template match="alt-text"> <!-- handled with graphic or inline-graphic --> </xsl:template> <xsl:template match="list"> <div class="list"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="label | title"/> <xsl:apply-templates select="." mode="list"/> </div> </xsl:template> <xsl:template priority="2" mode="list" match="list[@list-type='simple' or list-item/label]"> <ul style="list-style-type: none"> <xsl:apply-templates select="list-item"/> </ul> </xsl:template> <xsl:template match="list[@list-type='bullet' or not(@list-type)]" mode="list"> <ul> <xsl:apply-templates select="list-item"/> </ul> </xsl:template> <xsl:template match="list" mode="list"> <xsl:variable name="style"> <xsl:choose> <xsl:when test="@list-type='alpha-lower'">lower-alpha</xsl:when> <xsl:when test="@list-type='alpha-upper'">upper-alpha</xsl:when> <xsl:when test="@list-type='roman-lower'">lower-roman</xsl:when> <xsl:when test="@list-type='roman-upper'">upper-roman</xsl:when> <xsl:otherwise>decimal</xsl:otherwise> </xsl:choose> </xsl:variable> <ol style="list-style-type: {$style}"> <xsl:apply-templates select="list-item"/> </ol> </xsl:template> <xsl:template match="list-item"> <li> <xsl:apply-templates/> </li> </xsl:template> <xsl:template match="list-item/label"> <!-- if the next sibling is a p, the label will be called as a run-in --> <xsl:if test="following-sibling::*[1][not(self::p)]"> <xsl:call-template name="label"/> </xsl:if> </xsl:template> <xsl:template match="media"> <a> <xsl:call-template name="assign-id"/> <xsl:call-template name="assign-href"/> <xsl:apply-templates/> </a> </xsl:template> <xsl:template match="p | license-p"> <p> <xsl:if test="not(preceding-sibling::*)"> <xsl:attribute name="class">first</xsl:attribute> </xsl:if> <xsl:call-template name="assign-id"/> <xsl:apply-templates select="@content-type"/> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="@content-type"> <!-- <span class="generated">[</span> <xsl:value-of select="."/> <span class="generated">] </span> --> </xsl:template> <xsl:template match="list-item/p[not(preceding-sibling::*[not(self::label)])]"> <p> <xsl:call-template name="assign-id"/> <xsl:for-each select="preceding-sibling::label"> <span class="label"> <xsl:apply-templates/> </span> <xsl:text> </xsl:text> </xsl:for-each> <xsl:apply-templates select="@content-type"/> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="product"> <p class="product"> <xsl:call-template name="assign-id"/> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="permissions"> <div class="permissions"> <xsl:apply-templates select="copyright-statement"/> <xsl:if test="copyright-year | copyright-holder"> <p class="copyright"> <span class="generated">Copyright</span> <xsl:for-each select="copyright-year | copyright-holder"> <xsl:apply-templates/> <xsl:if test="not(position()=last())"> <span class="generated">, </span> </xsl:if> </xsl:for-each> </p> </xsl:if> <xsl:apply-templates select="license"/> </div> </xsl:template> <xsl:template match="copyright-statement"> <p class="copyright"> <xsl:apply-templates></xsl:apply-templates> </p> </xsl:template> <xsl:template match="def-list"> <div class="def-list"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="label | title"/> <div class="def-list table"> <xsl:if test="term-head|def-head"> <div class="row"> <div class="cell def-list-head"> <xsl:apply-templates select="term-head"/> </div> <div class="cell def-list-head"> <xsl:apply-templates select="def-head"/> </div> </div> </xsl:if> <xsl:apply-templates select="def-item"/> </div> <xsl:apply-templates select="def-list"/> </div> </xsl:template> <xsl:template match="def-item"> <div class="def-item row"> <xsl:call-template name="assign-id"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="term"> <div class="def-term cell"> <xsl:call-template name="assign-id"/> <p> <xsl:apply-templates/> </p> </div> </xsl:template> <xsl:template match="def"> <div class="def-def cell"> <xsl:call-template name="assign-id"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="disp-quote"> <div class="blockquote"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="preformat"> <pre class="preformat"> <xsl:apply-templates/> </pre> </xsl:template> <xsl:template match="code"> <pre class="sourceCode"> <code class="sourceCode"> <xsl:apply-templates/> </code> </pre> </xsl:template> <xsl:template match="alternatives | name-alternatives | collab-alternatives | aff-alternatives"> <xsl:apply-templates/> </xsl:template> <xsl:template match="citation-alternatives" priority="2"> <!-- priority bumped to supersede match on ref/* --> <!-- may appear in license-p, p, ref, td, th, title --> <xsl:apply-templates/> </xsl:template> <xsl:template match="ref"> <div class="row"> <div class="ref-label cell"> <p class="ref-label"> <xsl:apply-templates select="." mode="label"/> <xsl:text> </xsl:text> <!-- space forces vertical alignment of the paragraph --> <xsl:call-template name="named-anchor"/> </p> </div> <div class="ref-content cell"> <xsl:apply-templates/> </div> </div> </xsl:template> <xsl:template match="ref/* | ref/citation-alternatives/*" priority="0"> <!-- should match mixed-citation, element-citation, nlm-citation, or citation (in 2.3); note and label should be matched below; citation-alternatives is handled elsewhere --> <p class="citation"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="ref/note" priority="2"> <xsl:param name="label" select="''"/> <xsl:if test="normalize-space(string($label)) and not(preceding-sibling::*[not(self::label)])"> <p class="label"> <xsl:copy-of select="$label"/> </p> </xsl:if> <div class="note"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="app/related-article | app-group/related-article | bio/related-article | body/related-article | boxed-text/related-article | disp-quote/related-article | glossary/related-article | gloss-group/related-article | ref-list/related-article | sec/related-article"> <xsl:apply-templates select="." mode="metadata"/> </xsl:template> <xsl:template match="app/related-object | app-group/related-object | bio/related-object | body/related-object | boxed-text/related-object | disp-quote/related-object | glossary/related-object | gloss-group/related-article | ref-list/related-object | sec/related-object"> <xsl:apply-templates select="." mode="metadata"/> </xsl:template> <xsl:template match="speech"> <div class="speech"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates mode="speech"/> </div> </xsl:template> <xsl:template match="speech/speaker" mode="speech"/> <xsl:template match="speech/p" mode="speech"> <p> <xsl:apply-templates select="self::p[not(preceding-sibling::p)]/../speaker"/> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="speech/speaker"> <b> <xsl:apply-templates/> </b> <span class="generated">: </span> </xsl:template> <xsl:template match="supplementary-material"> <div class="panel"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates select="." mode="label"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="tex-math"> <span class="tex-math"> <span class="generated">[TeX:] </span> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="mml:*"> <!-- this stylesheet simply copies MathML through. If your browser supports it, you will get it --> <xsl:copy> <xsl:copy-of select="@*"/> <xsl:apply-templates/> </xsl:copy> </xsl:template> <xsl:template match="verse-group"> <div class="verse"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="verse-line"> <p class="verse-line"> <xsl:apply-templates/> </p> </xsl:template> <xsl:template match="aff/label | corresp/label | chem-struct/label | element-citation/label | mixed-citation/label | citation/label"> <!-- these labels appear in line --> <span class="generated">[</span> <xsl:apply-templates/> <span class="generated">] </span> </xsl:template> <xsl:template match="app/label | boxed-text/label | chem-struct-wrap/label | chem-struct-wrapper/label | disp-formula/label | fig/label | fn/label | ref/label | statement/label | supplementary-material/label | table-wrap/label" priority="2"> <!-- suppressed, since acquired by their parents in mode="label" --> </xsl:template> <xsl:template match="p/label"> <span class="label"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="label" name="label"> <!-- other labels are displayed as blocks --> <h5 class="label"> <xsl:apply-templates/> </h5> </xsl:template> <!-- ============================================================= --> <!-- TABLES --> <!-- ============================================================= --> <!-- Tables are already in XHTML, and can simply be copied through --> <xsl:template match="table | thead | tbody | tfoot | col | colgroup | tr | th | td"> <xsl:copy> <xsl:apply-templates select="@*" mode="table-copy"/> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </xsl:copy> </xsl:template> <xsl:template match="array/tbody"> <table> <xsl:copy> <xsl:apply-templates select="@*" mode="table-copy"/> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </xsl:copy> </table> </xsl:template> <xsl:template match="@*" mode="table-copy"> <xsl:copy-of select="."/> </xsl:template> <xsl:template match="@content-type" mode="table-copy"/> <!-- ============================================================= --> <!-- INLINE MISCELLANEOUS --> <!-- ============================================================= --> <!-- Templates strictly for formatting follow; these are templates to handle various inline structures --> <xsl:template match="abbrev"> <xsl:apply-templates/> </xsl:template> <xsl:template match="abbrev[normalize-space(string(@xlink:href))]"> <a> <xsl:call-template name="assign-href"/> <xsl:apply-templates/> </a> </xsl:template> <xsl:template match="abbrev/def"> <xsl:text>[</xsl:text> <xsl:apply-templates/> <xsl:text>]</xsl:text> </xsl:template> <xsl:template match="p/address | license-p/address | named-content/p | styled-content/p"> <xsl:apply-templates mode="inline"/> </xsl:template> <xsl:template match="address/*" mode="inline"> <xsl:if test="preceding-sibling::*"> <span class="generated">, </span> </xsl:if> <xsl:apply-templates/> </xsl:template> <xsl:template match="award-id"> <xsl:apply-templates/> </xsl:template> <xsl:template match="award-id[normalize-space(string(@rid))]"> <a href="#{@rid}"> <xsl:apply-templates/> </a> </xsl:template> <xsl:template match="break"> <br class="br"/> </xsl:template> <xsl:template match="email"> <a href="mailto:{.}"> <xsl:apply-templates/> </a> </xsl:template> <xsl:template match="ext-link | uri | inline-supplementary-material"> <a target="xrefwindow"> <xsl:attribute name="href"> <xsl:value-of select="."/> </xsl:attribute> <!-- if an @href is present, it overrides the href just attached --> <xsl:call-template name="assign-href"/> <xsl:call-template name="assign-id"/> <xsl:apply-templates/> <xsl:if test="not(normalize-space(string(.)))"> <xsl:value-of select="@xlink:href"/> </xsl:if> </a> </xsl:template> <xsl:template match="funding-source"> <span class="funding-source"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="hr"> <hr class="hr"/> </xsl:template> <!-- inline-graphic is handled above, with graphic --> <xsl:template match="inline-formula | chem-struct"> <span class="{local-name()}"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="chem-struct-wrap/chem-struct | chem-struct-wrapper/chem-struct"> <div class="{local-name()}"> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="milestone-start | milestone-end"> <span class="{substring-after(local-name(),'milestone-')}"> <xsl:comment> <xsl:value-of select="@rationale"/> </xsl:comment> </span> </xsl:template> <xsl:template match="object-id"> <span class="{local-name()}"> <xsl:apply-templates/> </span> </xsl:template> <!-- preformat is handled above --> <xsl:template match="sig"> <xsl:apply-templates/> </xsl:template> <xsl:template match="target"> <xsl:call-template name="named-anchor"/> </xsl:template> <xsl:template match="styled-content"> <span> <xsl:copy-of select="@style"/> <xsl:for-each select="@style-type"> <xsl:attribute name="class"> <xsl:value-of select="."/> </xsl:attribute> </xsl:for-each> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="named-content"> <span> <xsl:for-each select="@content-type"> <xsl:attribute name="class"> <xsl:value-of select="translate(.,' ','-')"/> </xsl:attribute> </xsl:for-each> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="private-char"> <span> <xsl:for-each select="@description"> <xsl:attribute name="title"> <xsl:value-of select="."/> </xsl:attribute> </xsl:for-each> <span class="generated">[Private character </span> <xsl:for-each select="@name"> <xsl:text> </xsl:text> <xsl:value-of select="."/> </xsl:for-each> <span class="generated">]</span> </span> </xsl:template> <xsl:template match="glyph-data | glyph-ref"> <span class="generated">(Glyph not rendered)</span> </xsl:template> <xsl:template match="related-article"> <span class="generated">[Related article:] </span> <xsl:apply-templates/> </xsl:template> <xsl:template match="related-object"> <span class="generated">[Related object:] </span> <xsl:apply-templates/> </xsl:template> <xsl:template match="xref[not(normalize-space(string(.)))]"> <a href="#{@rid}"> <xsl:apply-templates select="key('element-by-id',@rid)" mode="label-text"> <xsl:with-param name="warning" select="true()"/> </xsl:apply-templates> </a> </xsl:template> <xsl:template match="xref"> <a href="#{@rid}"> <xsl:apply-templates/> </a> </xsl:template> <!-- ============================================================= --> <!-- Formatting elements --> <!-- ============================================================= --> <xsl:template match="bold"> <b> <xsl:apply-templates/> </b> </xsl:template> <xsl:template match="italic"> <i> <xsl:apply-templates/> </i> </xsl:template> <xsl:template match="monospace"> <tt> <xsl:apply-templates/> </tt> </xsl:template> <xsl:template match="overline"> <span style="text-decoration: overline"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="price"> <span class="price"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="roman"> <span style="font-style: normal"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="sans-serif"> <span style="font-family: sans-serif; font-size: 80%"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="sc"> <span style="font-variant: small-caps"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="strike"> <span style="text-decoration: line-through"> <xsl:apply-templates/> </span> </xsl:template> <xsl:template match="sub"> <sub> <xsl:apply-templates/> </sub> </xsl:template> <xsl:template match="sup"> <sup> <xsl:apply-templates/> </sup> </xsl:template> <xsl:template match="underline"> <span style="text-decoration: underline"> <xsl:apply-templates/> </span> </xsl:template> <!-- ============================================================= --> <!-- BACK MATTER --> <!-- ============================================================= --> <xsl:variable name="loose-footnotes" select="//fn[not(ancestor::front|parent::fn-group|ancestor::table-wrap)]"/> <xsl:template name="make-back"> <xsl:apply-templates select="back"/> <xsl:if test="$loose-footnotes and not(back)"> <!-- autogenerating a section for footnotes only if there is no back element, and if footnotes exist for it --> <xsl:call-template name="footnotes"/> </xsl:if> </xsl:template> <xsl:template match="back"> <!-- content model for back: (label?, title*, (ack | app-group | bio | fn-group | glossary | ref-list | notes | sec)*) --> <xsl:if test="not(fn-group) and $loose-footnotes"> <xsl:call-template name="footnotes"/> </xsl:if> <xsl:apply-templates/> </xsl:template> <xsl:template name="footnotes"> <xsl:call-template name="backmatter-section"> <xsl:with-param name="generated-title">Notes</xsl:with-param> <xsl:with-param name="contents"> <xsl:apply-templates select="$loose-footnotes" mode="footnote"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="ack"> <xsl:call-template name="backmatter-section"> <xsl:with-param name="generated-title">Acknowledgements</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="app-group"> <xsl:call-template name="backmatter-section"> <xsl:with-param name="generated-title">Appendices</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="back/bio"> <xsl:call-template name="backmatter-section"> <xsl:with-param name="generated-title">Biography</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="back/fn-group"> <xsl:call-template name="backmatter-section"> <xsl:with-param name="generated-title">Notes</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="back/glossary | back/gloss-group"> <xsl:call-template name="backmatter-section"> <xsl:with-param name="generated-title">Glossary</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="back/ref-list"> <xsl:call-template name="backmatter-section"> <xsl:with-param name="generated-title">References</xsl:with-param> <xsl:with-param name="contents"> <xsl:call-template name="ref-list"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="back/notes"> <xsl:call-template name="backmatter-section"> <xsl:with-param name="generated-title">Notes</xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template name="backmatter-section"> <xsl:param name="generated-title"/> <xsl:param name="contents"> <xsl:apply-templates/> </xsl:param> <div class="back-section"> <xsl:call-template name="named-anchor"/> <xsl:if test="not(title) and $generated-title"> <xsl:choose> <!-- The level of title depends on whether the back matter itself has a title --> <xsl:when test="ancestor::back/title"> <xsl:call-template name="section-title"> <xsl:with-param name="contents" select="$generated-title"/> </xsl:call-template> </xsl:when> <xsl:otherwise> <xsl:call-template name="main-title"> <xsl:with-param name="contents" select="$generated-title"/> </xsl:call-template> </xsl:otherwise> </xsl:choose> </xsl:if> <xsl:copy-of select="$contents"/> </div> </xsl:template> <!-- ============================================================= --> <!-- FOOTNOTES --> <!-- ============================================================= --> <xsl:template match="fn"> <!-- Footnotes appearing outside fn-group generate cross-references to the footnote, which is displayed elsewhere --> <!-- Note the rules for displayed content: if any fn elements not inside an fn-group (the matched fn or any other) includes a label child, all footnotes are expected to have a label child. --> <xsl:variable name="id"> <xsl:apply-templates select="." mode="id"/> </xsl:variable> <a href="#{$id}"> <xsl:apply-templates select="." mode="label-text"> <xsl:with-param name="warning" select="true()"/> </xsl:apply-templates> </a> </xsl:template> <xsl:template match="fn-group/fn | table-wrap-foot/fn | table-wrap-foot/fn-group/fn"> <xsl:apply-templates select="." mode="footnote"/> </xsl:template> <xsl:template match="fn" mode="footnote"> <div class="footnote"> <xsl:call-template name="named-anchor"/> <xsl:apply-templates/> </div> </xsl:template> <xsl:template match="fn/p"> <p> <xsl:call-template name="assign-id"/> <xsl:if test="not(preceding-sibling::p)"> <!-- drop an inline label text into the first p --> <xsl:apply-templates select="parent::fn" mode="label-text"/> <xsl:text> </xsl:text> </xsl:if> <xsl:apply-templates/> </p> </xsl:template> <!-- ============================================================= --> <!-- MODE 'label-text' Generates label text for elements and their cross-references --> <!-- ============================================================= --> <!-- This mode is to support auto-numbering and generating of labels for certain elements by the stylesheet. The logic is as follows: for any such element type, if a 'label' element is ever present, it is expected always to be present; automatic numbering is not performed on any elements of that type. For example, the presence of a 'label' element in any 'fig' is taken to indicate that all figs should likewise be labeled, and any 'fig' without a label is supposed to be unlabelled (and unnumbered). But if no 'fig' elements have 'label' children, labels with numbers are generated for all figs in display. This logic applies to: app, boxed-text, chem-struct-wrap, disp-formula, fig, fn, note, ref, statement, table-wrap. There is one exception in the case of fn elements, where the checking for labels (or for @symbol attributes in the case of this element) is performed only within its parent fn-group, or in the scope of all fn elements not in an fn-group, for fn elements appearing outside fn-group. In all cases, this logic can be altered simply by overwriting templates in "label" mode for any of these elements. For other elements, a label is simply displayed if present, and auto-numbering is never performed. These elements include: (label appearing in line) aff, corresp, chem-struct, element-citation, mixed-citation (label appearing as a block) abstract, ack, app-group, author-notes, back, bio, def-list, disp-formula-group, disp-quote, fn-group, glossary, graphic, kwd-group, list, list-item, media, notes, ref-list, sec, supplementary-material, table-wrap-group, trans-abstract, verse-group --> <xsl:variable name="auto-label-app" select="false()"/> <xsl:variable name="auto-label-boxed-text" select="false()"/> <xsl:variable name="auto-label-chem-struct-wrap" select="false()"/> <xsl:variable name="auto-label-disp-formula" select="false()"/> <xsl:variable name="auto-label-fig" select="false()"/> <xsl:variable name="auto-label-ref" select="not(//ref[label])"/> <!-- ref elements are labeled unless any ref already has a label --> <xsl:variable name="auto-label-statement" select="false()"/> <xsl:variable name="auto-label-supplementary" select="false()"/> <xsl:variable name="auto-label-table-wrap" select="false()"/> <!-- These variables assignments show how autolabeling can be configured conditionally. For example: "label figures if no figures have labels" translates to "not(//fig[label])", which will resolve to Boolean true() when the set of all fig elements with labels is empty. <xsl:variable name="auto-label-app" select="not(//app[label])"/> <xsl:variable name="auto-label-boxed-text" select="not(//boxed-text[label])"/> <xsl:variable name="auto-label-chem-struct-wrap" select="not(//chem-struct-wrap[label])"/> <xsl:variable name="auto-label-disp-formula" select="not(//disp-formula[label])"/> <xsl:variable name="auto-label-fig" select="not(//fig[label])"/> <xsl:variable name="auto-label-ref" select="not(//ref[label])"/> <xsl:variable name="auto-label-statement" select="not(//statement[label])"/> <xsl:variable name="auto-label-supplementary" select="not(//supplementary-material[not(ancestor::front)][label])"/> <xsl:variable name="auto-label-table-wrap" select="not(//table-wrap[label])"/> --> <xsl:template mode="label" match="*" name="block-label"> <xsl:param name="contents"> <xsl:apply-templates select="." mode="label-text"> <!-- we place a warning for missing labels if this element is ever cross-referenced with an empty xref --> <xsl:with-param name="warning" select="boolean(key('xref-by-rid',@id)[not(normalize-space(string(.)))])"/> </xsl:apply-templates> </xsl:param> <xsl:if test="normalize-space(string($contents))"> <!-- not to create an h5 for nothing --> <h5 class="label"> <xsl:copy-of select="$contents"/> </h5> </xsl:if> </xsl:template> <xsl:template mode="label" match="ref"> <xsl:param name="contents"> <xsl:apply-templates select="." mode="label-text"/> </xsl:param> <xsl:if test="normalize-space(string($contents))"> <!-- we're already in a p --> <span class="label"> <xsl:copy-of select="$contents"/> </span> </xsl:if> </xsl:template> <xsl:template match="app" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-app"/> <xsl:with-param name="warning" select="$warning"/> <!-- Pass in the desired label if a label is to be autogenerated <xsl:with-param name="auto-text"> <xsl:text>Appendix </xsl:text> <xsl:number format="A"/> </xsl:with-param>--> </xsl:call-template> </xsl:template> <xsl:template match="boxed-text" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-boxed-text"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>Box </xsl:text> <xsl:number level="any"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="disp-formula" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-disp-formula"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>Formula </xsl:text> <xsl:number level="any"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="chem-struct-wrap | chem-struct-wrapper" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-chem-struct-wrap"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>Formula (chemical) </xsl:text> <xsl:number level="any"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="fig" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-fig"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>Figure </xsl:text> <xsl:number level="any"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="front//fn" mode="label-text"> <xsl:param name="warning" select="boolean(key('xref-by-rid',@id))"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels); by default, we get a warning only if we need a label for a cross-reference --> <!-- auto-number-fn is true only if (1) this fn is cross-referenced, and (2) there exists inside the front matter any fn elements with cross-references, but not labels or @symbols. --> <xsl:param name="auto-number-fn" select="boolean(key('xref-by-rid',parent::fn/@id)) and boolean(ancestor::front//fn[key('xref-by-rid',@id)][not(label|@symbol)])"/> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-number-fn"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:number level="any" count="fn" from="front" format="a"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="table-wrap//fn" mode="label-text"> <xsl:param name="warning" select="boolean(key('xref-by-rid',@id))"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels); by default, we get a warning only if we need a label for a cross-reference --> <xsl:param name="auto-number-fn" select="not(ancestor::table-wrap//fn/label | ancestor::table-wrap//fn/@symbol)"/> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-number-fn"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>[</xsl:text> <xsl:number level="any" count="fn" from="table-wrap" format="i"/> <xsl:text>]</xsl:text> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="fn" mode="label-text"> <xsl:param name="warning" select="boolean(key('xref-by-rid',@id))"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels); by default, we get a warning only if we need a label for a cross-reference --> <!-- autonumber all fn elements outside fn-group, front matter and table-wrap only if none of them have labels or @symbols (to keep numbering orderly) --> <xsl:variable name="in-scope-notes" select="ancestor::article//fn[not(parent::fn-group | ancestor::front | ancestor::table-wrap)]"/> <xsl:variable name="auto-number-fn" select="not($in-scope-notes/label | $in-scope-notes/@symbol)"/> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-number-fn"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>[</xsl:text> <xsl:number level="any" count="fn[not(ancestor::front)]" from="article | sub-article | response"/> <xsl:text>]</xsl:text> <xsl:apply-templates select="@fn-type"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="fn/@fn-type[.='abbr']" priority="2"> <span class="generated"> Abbreviation</span> </xsl:template> <xsl:template match="fn/@fn-type[.='com']" priority="2"> <span class="generated"> Communicated by</span> </xsl:template> <xsl:template match="fn/@fn-type[.='con']" priority="2"> <span class="generated"> Contributed by</span> </xsl:template> <xsl:template match="fn/@fn-type[.='conflict']" priority="2"> <span class="generated"> Conflicts of interest</span> </xsl:template> <xsl:template match="fn/@fn-type[.='corresp']" priority="2"> <span class="generated"> Corresponding author</span> </xsl:template> <xsl:template match="fn/@fn-type[.='current-aff']" priority="2"> <span class="generated"> Current affiliation</span> </xsl:template> <xsl:template match="fn/@fn-type[.='deceased']" priority="2"> <span class="generated"> Deceased</span> </xsl:template> <xsl:template match="fn/@fn-type[.='edited-by']" priority="2"> <span class="generated"> Edited by</span> </xsl:template> <xsl:template match="fn/@fn-type[.='equal']" priority="2"> <span class="generated"> Equal contributor</span> </xsl:template> <xsl:template match="fn/@fn-type[.='financial-disclosure']" priority="2"> <span class="generated"> Financial disclosure</span> </xsl:template> <xsl:template match="fn/@fn-type[.='on-leave']" priority="2"> <span class="generated"> On leave</span> </xsl:template> <xsl:template match="fn/@fn-type[.='other']" priority="2"/> <xsl:template match="fn/@fn-type[.='participating-researchers']" priority="2"> <span class="generated"> Participating researcher</span> </xsl:template> <xsl:template match="fn/@fn-type[.='present-address']" priority="2"> <span class="generated"> Current address</span> </xsl:template> <xsl:template match="fn/@fn-type[.='presented-at']" priority="2"> <span class="generated"> Presented at</span> </xsl:template> <xsl:template match="fn/@fn-type[.='presented-by']" priority="2"> <span class="generated"> Presented by</span> </xsl:template> <xsl:template match="fn/@fn-type[.='previously-at']" priority="2"> <span class="generated"> Previously at</span> </xsl:template> <xsl:template match="fn/@fn-type[.='study-group-members']" priority="2"> <span class="generated"> Study group member</span> </xsl:template> <xsl:template match="fn/@fn-type[.='supplementary-material']" priority="2"> <span class="generated"> Supplementary material</span> </xsl:template> <xsl:template match="fn/@fn-type[.='supported-by']" priority="2"> <span class="generated"> Supported by</span> </xsl:template> <xsl:template match="fn/@fn-type"/> <xsl:template match="ref" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-ref"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:number level="any"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="statement" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-statement"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>Statement </xsl:text> <xsl:number level="any"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="supplementary-material" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-supplementary"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>Supplementary Material </xsl:text> <xsl:number level="any" format="A" count="supplementary-material[not(ancestor::front)]"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="table-wrap" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="auto" select="$auto-label-table-wrap"/> <xsl:with-param name="warning" select="$warning"/> <xsl:with-param name="auto-text"> <xsl:text>Table </xsl:text> <xsl:number level="any" format="I"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template match="*" mode="label-text"> <xsl:param name="warning" select="true()"/> <!-- pass $warning in as false() if a warning string is not wanted (for example, if generating autonumbered labels) --> <xsl:call-template name="make-label-text"> <xsl:with-param name="warning" select="$warning"/> </xsl:call-template> </xsl:template> <xsl:template match="label" mode="label-text"> <xsl:apply-templates mode="inline-label-text"/> </xsl:template> <xsl:template match="text()" mode="inline-label-text"> <!-- when displaying labels, space characters become non-breaking spaces --> <xsl:value-of select="translate(normalize-space(string(.)),' 
	','   ')"/> </xsl:template> <!-- ============================================================= --> <!-- Writing a name --> <!-- ============================================================= --> <!-- Called when displaying structured names in metadata --> <xsl:template match="name"> <xsl:apply-templates select="prefix" mode="inline-name"/> <xsl:apply-templates select="surname[../@name-style='eastern']" mode="inline-name"/> <xsl:apply-templates select="given-names" mode="inline-name"/> <xsl:apply-templates select="surname[not(../@name-style='eastern')]" mode="inline-name"/> <xsl:apply-templates select="suffix" mode="inline-name"/> </xsl:template> <xsl:template match="prefix" mode="inline-name"> <xsl:apply-templates/> <xsl:if test="../surname | ../given-names | ../suffix"> <xsl:text> </xsl:text> </xsl:if> </xsl:template> <xsl:template match="given-names" mode="inline-name"> <xsl:apply-templates/> <xsl:if test="../surname[not(../@name-style='eastern')] | ../suffix"> <xsl:text> </xsl:text> </xsl:if> </xsl:template> <xsl:template match="contrib/name/surname" mode="inline-name"> <xsl:apply-templates/> <xsl:if test="../given-names[../@name-style='eastern'] | ../suffix"> <xsl:text> </xsl:text> </xsl:if> </xsl:template> <xsl:template match="surname" mode="inline-name"> <xsl:apply-templates/> <xsl:if test="../given-names[../@name-style='eastern'] | ../suffix"> <xsl:text> </xsl:text> </xsl:if> </xsl:template> <xsl:template match="suffix" mode="inline-name"> <xsl:apply-templates/> </xsl:template> <!-- string-name elements are written as is --> <xsl:template match="string-name"> <xsl:apply-templates/> </xsl:template> <xsl:template match="string-name/*"> <xsl:apply-templates/> </xsl:template> <!-- ============================================================= --> <!-- UTILITY TEMPLATES --> <!-- ============================================================= --> <xsl:template name="append-pub-type"> <!-- adds a value mapped for @pub-type, enclosed in parenthesis, to a string --> <xsl:for-each select="@pub-type"> <xsl:text> (</xsl:text> <span class="data"> <xsl:choose> <xsl:when test=".='epub'">electronic</xsl:when> <xsl:when test=".='ppub'">print</xsl:when> <xsl:when test=".='epub-ppub'">print and electronic</xsl:when> <xsl:when test=".='epreprint'">electronic preprint</xsl:when> <xsl:when test=".='ppreprint'">print preprint</xsl:when> <xsl:when test=".='ecorrected'">corrected, electronic</xsl:when> <xsl:when test=".='pcorrected'">corrected, print</xsl:when> <xsl:when test=".='eretracted'">retracted, electronic</xsl:when> <xsl:when test=".='pretracted'">retracted, print</xsl:when> <xsl:otherwise> <xsl:value-of select="."/> </xsl:otherwise> </xsl:choose> </span> <xsl:text>)</xsl:text> </xsl:for-each> </xsl:template> <xsl:template name="metadata-labeled-entry"> <xsl:param name="label"/> <xsl:param name="contents"> <xsl:apply-templates/> </xsl:param> <xsl:call-template name="metadata-entry"> <xsl:with-param name="contents"> <xsl:if test="normalize-space(string($label))"> <span class="generated"> <xsl:copy-of select="$label"/> <xsl:text>: </xsl:text> </span> </xsl:if> <xsl:copy-of select="$contents"/> </xsl:with-param> </xsl:call-template> </xsl:template> <xsl:template name="metadata-entry"> <xsl:param name="contents"> <xsl:apply-templates/> </xsl:param> <p class="metadata-entry"> <xsl:copy-of select="$contents"/> </p> </xsl:template> <xsl:template name="metadata-area"> <xsl:param name="label"/> <xsl:param name="contents"> <xsl:apply-templates/> </xsl:param> <div class="metadata-area"> <xsl:if test="normalize-space(string($label))"> <xsl:call-template name="metadata-labeled-entry"> <xsl:with-param name="label"> <xsl:copy-of select="$label"/> </xsl:with-param> <xsl:with-param name="contents"/> </xsl:call-template> </xsl:if> <div class="metadata-chunk"> <xsl:copy-of select="$contents"/> </div> </div> </xsl:template> <xsl:template name="make-label-text"> <xsl:param name="auto" select="false()"/> <xsl:param name="warning" select="false()"/> <xsl:param name="auto-text"/> <xsl:choose> <xsl:when test="$auto"> <span class="generated"> <xsl:copy-of select="$auto-text"/> </span> </xsl:when> <xsl:otherwise> <xsl:apply-templates mode="label-text" select="label | @symbol"/> <xsl:if test="$warning and not(label|@symbol)"> <span class="warning"> <xsl:text>{ label</xsl:text> <xsl:if test="self::fn"> (or @symbol)</xsl:if> <xsl:text> needed for </xsl:text> <xsl:value-of select="local-name()"/> <xsl:for-each select="@id"> <xsl:text>[@id='</xsl:text> <xsl:value-of select="."/> <xsl:text>']</xsl:text> </xsl:for-each> <xsl:text> }</xsl:text> </span> </xsl:if> </xsl:otherwise> </xsl:choose> </xsl:template> <xsl:template name="assign-id"> <xsl:variable name="id"> <xsl:apply-templates select="." mode="id"/> </xsl:variable> <xsl:attribute name="id"> <xsl:value-of select="$id"/> </xsl:attribute> </xsl:template> <xsl:template name="assign-src"> <xsl:for-each select="@xlink:href"> <xsl:attribute name="src"> <xsl:value-of select="."/> </xsl:attribute> </xsl:for-each> </xsl:template> <xsl:template name="assign-href"> <xsl:for-each select="@xlink:href"> <xsl:attribute name="href"> <xsl:value-of select="."/> </xsl:attribute> </xsl:for-each> </xsl:template> <xsl:template name="named-anchor"> <!-- generates an HTML named anchor --> <xsl:variable name="id"> <xsl:choose> <xsl:when test="@id"> <!-- if we have an @id, we use it --> <xsl:value-of select="@id"/> </xsl:when> <xsl:when test="not(preceding-sibling::*) and (parent::alternatives | parent::name-alternatives | parent::citation-alternatives | parent::collab-alternatives | parent::aff-alternatives)/@id"> <!-- if not, and we are first among our siblings inside one of several 'alternatives' wrappers, we use its @id if available --> <xsl:value-of select="(parent::alternatives | parent::name-alternatives | parent::citation-alternatives | parent::collab-alternatives | parent::aff-alternatives)/@id"/> </xsl:when> <xsl:otherwise> <!-- otherwise we simply generate an ID --> <xsl:value-of select="generate-id(.)"/> </xsl:otherwise> </xsl:choose> </xsl:variable> <a id="{$id}"> <xsl:comment> named anchor </xsl:comment> </a> </xsl:template> <!-- ============================================================= --> <!-- Process warnings --> <!-- ============================================================= --> <!-- Generates a list of warnings to be reported due to processing anomalies. --> <xsl:template name="process-warnings"> <!-- Only generate the warnings if set to $verbose --> <xsl:if test="$verbose"> <!-- returns an RTF containing all the warnings --> <xsl:variable name="xref-warnings"> <xsl:for-each select="//xref[not(normalize-space(string(.)))]"> <xsl:variable name="target-label"> <xsl:apply-templates select="key('element-by-id',@rid)" mode="label-text"> <xsl:with-param name="warning" select="false()"/> </xsl:apply-templates> </xsl:variable> <xsl:if test="not(normalize-space(string($target-label))) and generate-id(.) = generate-id(key('xref-by-rid',@rid)[1])"> <!-- if we failed to get a label with no warning, and this is the first cross-reference to this target we ask again to get the warning --> <li> <xsl:apply-templates select="key('element-by-id',@rid)" mode="label-text"> <xsl:with-param name="warning" select="true()"/> </xsl:apply-templates> </li> </xsl:if> </xsl:for-each> </xsl:variable> <xsl:if test="normalize-space(string($xref-warnings))"> <h4>Elements are cross-referenced without labels.</h4> <p>Either the element should be provided a label, or their cross-reference(s) should have literal text content.</p> <ul> <xsl:copy-of select="$xref-warnings"/> </ul> </xsl:if> <xsl:variable name="alternatives-warnings"> <!-- for reporting any element with a @specific-use different from a sibling --> <xsl:for-each select="//*[@specific-use != ../*/@specific-use]/.."> <li> <xsl:text>In </xsl:text> <xsl:apply-templates select="." mode="xpath"/> <ul> <xsl:for-each select="*[@specific-use != ../*/@specific-use]"> <li> <xsl:apply-templates select="." mode="pattern"/> </li> </xsl:for-each> </ul> <!--<xsl:text>: </xsl:text> <xsl:call-template name="list-elements"> <xsl:with-param name="elements" select="*[@specific-use]"/> </xsl:call-template>--> </li> </xsl:for-each> </xsl:variable> <xsl:if test="normalize-space(string($alternatives-warnings))"> <h4>Elements with different 'specific-use' assignments appearing together</h4> <ul> <xsl:copy-of select="$alternatives-warnings"/> </ul> </xsl:if> </xsl:if> </xsl:template> <!-- ============================================================= --> <!-- id mode --> <!-- ============================================================= --> <!-- An id can be derived for any element. If an @id is given, it is presumed unique and copied. If not, one is generated. --> <xsl:template match="*" mode="id"> <xsl:value-of select="@id"/> <xsl:if test="not(@id)"> <xsl:value-of select="generate-id(.)"/> </xsl:if> </xsl:template> <xsl:template match="article | sub-article | response" mode="id"> <xsl:value-of select="@id"/> <xsl:if test="not(@id)"> <xsl:value-of select="local-name()"/> <xsl:number from="article" level="multiple" count="article | sub-article | response" format="1-1"/> </xsl:if> </xsl:template> <!-- ============================================================= --> <!-- "format-date" --> <!-- ============================================================= --> <!-- Maps a structured date element to a string --> <xsl:template name="format-date"> <!-- formats date in DD Month YYYY format --> <!-- context must be 'date', with content model: (((day?, month?) | season)?, year) --> <xsl:for-each select="day|month|season"> <xsl:apply-templates select="." mode="map"/> <xsl:text> </xsl:text> </xsl:for-each> <xsl:apply-templates select="year" mode="map"/> </xsl:template> <xsl:template match="day | season | year" mode="map"> <xsl:apply-templates/> </xsl:template> <xsl:template match="month" mode="map"> <!-- maps numeric values to English months --> <xsl:choose> <xsl:when test="number() = 1">January</xsl:when> <xsl:when test="number() = 2">February</xsl:when> <xsl:when test="number() = 3">March</xsl:when> <xsl:when test="number() = 4">April</xsl:when> <xsl:when test="number() = 5">May</xsl:when> <xsl:when test="number() = 6">June</xsl:when> <xsl:when test="number() = 7">July</xsl:when> <xsl:when test="number() = 8">August</xsl:when> <xsl:when test="number() = 9">September</xsl:when> <xsl:when test="number() = 10">October</xsl:when> <xsl:when test="number() = 11">November</xsl:when> <xsl:when test="number() = 12">December</xsl:when> <xsl:otherwise> <xsl:apply-templates/> </xsl:otherwise> </xsl:choose> </xsl:template> <!-- ============================================================= --> <!-- "author-string" writes authors' names in sequence --> <!-- ============================================================= --> <xsl:template name="author-string"> <xsl:variable name="all-contribs" select="/article/front/article-meta/contrib-group/contrib/name/surname | /article/front/article-meta/contrib-group/contrib/collab"/> <xsl:for-each select="$all-contribs"> <xsl:if test="count($all-contribs) > 1"> <xsl:if test="position() > 1"> <xsl:if test="count($all-contribs) > 2">,</xsl:if> <xsl:text> </xsl:text> </xsl:if> <xsl:if test="position() = count($all-contribs)">and </xsl:if> </xsl:if> <xsl:value-of select="."/> </xsl:for-each> </xsl:template> <!-- ============================================================= --> <!-- Footer branding --> <!-- ============================================================= --> <xsl:template name="footer-branding"> <div class="branding"> <p> <xsl:text>(Preview based upon NISO JATS XSLT)</xsl:text> </p> </div> </xsl:template> <!-- ============================================================= --> <!-- Utility templates for generating warnings and reports --> <!-- ============================================================= --> <!-- <xsl:template name="report-warning"> <xsl:param name="when" select="false()"/> <xsl:param name="msg"/> <xsl:if test="$verbose and $when"> <xsl:message> <xsl:copy-of select="$msg"/> </xsl:message> </xsl:if> </xsl:template>--> <!--<xsl:template name="list-elements"> <xsl:param name="elements" select="/.."/> <xsl:if test="$elements"> <ol> <xsl:for-each select="*"> <li> <xsl:apply-templates select="." mode="element-pattern"/> </li> </xsl:for-each> </ol> </xsl:if> </xsl:template>--> <xsl:template match="*" mode="pattern"> <xsl:value-of select="name(.)"/> <xsl:for-each select="@*"> <xsl:text>[@</xsl:text> <xsl:value-of select="name()"/> <xsl:text>='</xsl:text> <xsl:value-of select="."/> <xsl:text>']</xsl:text> </xsl:for-each> </xsl:template> <xsl:template match="node()" mode="xpath"> <xsl:apply-templates mode="xpath" select=".."/> <xsl:apply-templates mode="xpath-step" select="."/> </xsl:template> <xsl:template match="/" mode="xpath"/> <xsl:template match="*" mode="xpath-step"> <xsl:variable name="name" select="name(.)"/> <xsl:text>/</xsl:text> <xsl:value-of select="$name"/> <xsl:if test="count(../*[name(.) = $name]) > 1"> <xsl:text>[</xsl:text> <xsl:value-of select="count(.|preceding-sibling::*[name(.) = $name])"/> <xsl:text>]</xsl:text> </xsl:if> </xsl:template> <xsl:template match="@*" mode="xpath-step"> <xsl:text>/@</xsl:text> <xsl:value-of select="name(.)"/> </xsl:template> <xsl:template match="comment()" mode="xpath-step"> <xsl:text>/comment()</xsl:text> <xsl:if test="count(../comment()) > 1"> <xsl:text>[</xsl:text> <xsl:value-of select="count(.|preceding-sibling::comment())"/> <xsl:text>]</xsl:text> </xsl:if> </xsl:template> <xsl:template match="processing-instruction()" mode="xpath-step"> <xsl:text>/processing-instruction()</xsl:text> <xsl:if test="count(../processing-instruction()) > 1"> <xsl:text>[</xsl:text> <xsl:value-of select="count(.|preceding-sibling::processing-instruction())"/> <xsl:text>]</xsl:text> </xsl:if> </xsl:template> <xsl:template match="text()" mode="xpath-step"> <xsl:text>/text()</xsl:text> <xsl:if test="count(../text()) > 1"> <xsl:text>[</xsl:text> <xsl:value-of select="count(.|preceding-sibling::text())"/> <xsl:text>]</xsl:text> </xsl:if> </xsl:template> <!-- ============================================================= --> <!-- End stylesheet --> <!-- ============================================================= --> </xsl:stylesheet>